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Title: A MICROFLUIDIC INTESTINAL-MICROBIOTA PLATFORM TO STUDY DRUG METABOLISM
Creator: Wang, Chengyao
Date: 2020
Description: The intestine is the main site that orally administered drugs are primarily metabolized, absorbed, and distributed. The trillions of bacteria...
Show moreThe intestine is the main site that orally administered drugs are primarily metabolized, absorbed, and distributed. The trillions of bacteria that inhabit the intestine influence health and regulate important biochemical factors, such as the activity of enzymes pertinent to drug metabolism. However, this has not been systematically studied partly due to the challenges of recapitulating the unique and complex intestinal microenvironment that includes (1) the presence of mammalian and microbial cells and (2) a unique partitioned oxygenation proﬁle across the lumen to the subepithelial mucosa from anaerobic to the richly vascularized oxygenated. This thesis reports the development of a microfluidic device in which is integrated a membrane synthesized from a key element of mucosal basal lamina, collagen, and precisely controlled partitioned oxygen environment. The device enabled excellent cell viability and long-term function. More importantly, it enabled the coculture of intestinal epithelial cells and aerobic and anaerobic bacteria in the partitioned oxygen environment. These experiments on one hand allowed the measurement of cellular oxygen consumption rate under perfusion, which could be used to study microbial regulation of oxidative metabolism in epithelial cells. On the other hand, the device allowed a systematic examination of the role of different gut bacteria strains on the regulation of factors that are important in drug metabolism, namely, transporters and phase I enzymes. Our studies highlighted the importance of direct communication between the intestinal cells and the gut bacteria with major findings being that species-specific differences exist in the regulation of drug metabolism. This work will be useful for (1) the discovery of novel regulators of drug metabolizing enzymes, (2) developing new pharmacokinetic models, and (3) advancing precision medicine models for patients.
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Title: Military Science Building, Illinois Institute of Technology, Chicago, Illinois, ca. 1953
Date: ca. 1953
Description: Date of photograph is unknown. Date listed (1950) is approximate date. Building was located at 3201 South Michigan Avenue. Construction date...
Show moreDate of photograph is unknown. Date listed (1950) is approximate date. Building was located at 3201 South Michigan Avenue. Construction date unknown (demolished ca. 1996-97). This building was initially leased by the Armour Research Foundation in 1951, and acquired by Illinois Tech in 1965. Formerly/Also Known As: Richard D. Irwin Inc. Building (unknown-1941), Sampson Electric Company (1930s-1950s?), Armour Research Foundation Electrical Engineering Research Building (1951-1965), Information Science Building (ca. 1965-ca. 1972), Michigan Building (1972).
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Collection: Technology News slide collection, 1955-1960

Title: Technology News, January 10, 1944
Creator: Illinois Institute of Technology
Date: 1944-01-10, 1944-01-10
Collection: Technology News Microfilm collection, 1928-1981

Title: Population Dynamics of Listeria monocytogenes in Nut, Seed and Legume Butters
Creator: Zhang, Xinyuan
Date: 2020
Description: Nut, seed, and legume butters are low water activity foods and do not support the growth of foodborne pathogens. Research has determined that...
Show moreNut, seed, and legume butters are low water activity foods and do not support the growth of foodborne pathogens. Research has determined that some pathogens, such as Listeria monocytogenes, can survive for long periods of time in butters, such as almond butter. However, information on the persistence of L. monocytogenes in butters is lacking. The purpose of this study was to determine the population dynamics of L. monocytogenes in butters stored at 5 and 25°C. Nut (almond, hazelnut, pecan), seed (pumpkin, sesame, sunflower), legume (peanut and soy) and butters containing chocolate (hazelnut and peanut) were inoculated with a 4-strain cocktail of rifampicin-resistant L. monocytogenes at 4 (high inoculation) or 1 log CFU/g (low inoculation). High inoculation butters were mixed by hand for 15 min and 100-g portions were weighed into deli-style containers with lids and stored at 5 or 25°C for 12 mo (370 d). Low inoculation butters were stored in 25- g portions in stomacher bags at 25°C for 6 mo (180 d). During storage, 25 g from the 100- g high inoculation portion or 25 g from the low inoculation samples, in triplicate, were homogenized with 225 mL BPB (or BLEB for FDA BAM enrichments when necessary) and serial dilutions of the homogenate were plated onto BHIA with rifampicin for enumeration of L. monocytogenes. Data were statistically analyzed using Student’s t-test (α=0.05). The average initial population of L. monocytogenes in the butters was 3.58±0.25 log CFU/g for the high inoculation butters; L. monocytogenes was detected through enrichments for all low inoculation butters. After 12 mo storage at 5°C, the population of L. monocytogenes decreased by 1.34, 1.27, 1.72, 2.04 and 0.93 log CFU/g in almond, hazelnut, peanut with chocolate, hazelnut with chocolate and pecan butter, respectively, when inoculated at the higher level. Significantly less population reduction was observed in pumpkin, sesame, soy, peanut and sunflower butters (1.08, 0.61, 0.84, 0.05 and 0.40 log CFU/g, respectively). After 12 mo storage at 25°C, the L. monocytogenes population in all butters, with the exception of sunflower butter, decreased to below the limit of enumeration (1.67 log CFU/g), but the pathogen was still present via enrichment. For low inoculation butters, L. monocytogenes was present as determined by enrichment in all butters in at least one of two trials after 6 mo. The results of this study provide information on the survival of L. monocytogenes in different butter types when stored at different temperatures.
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Title: Keith School, Chicago, Illinois
Creator: Illinois Institute of Technology. Office of Public Relations
Date: 1950-1959
Description: Photograph of the Keith School, which was constructed in 1883 and demolished in 1959. This elementary school, named after Chicago milliner...
Show morePhotograph of the Keith School, which was constructed in 1883 and demolished in 1959. This elementary school, named after Chicago milliner Elbridge G. Keith, opened its doors in 1883. The school, which became increasingly surrounded by the Institute's campus, closed in 1959, and was demolished that same year. Date of photograph is unknown. Date range listed (1950-1959) is approximate.
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Collection: Dan Ryan collection, 1954-1980

Title: Pencil drawing, 1973
Creator: Henry, Mary Dill, 1913-2009
Date: 1973-10-01
Description: Untitled pencil drawing by Mary Henry, possibly a sketch or study made during the development of a larger piece. Inscription: "Somber dark, 3...
Show moreUntitled pencil drawing by Mary Henry, possibly a sketch or study made during the development of a larger piece. Inscription: "Somber dark, 3 panels - black brown blue with white stripes."
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Collection: Mary Dill Henry Papers, 1913-2021

Title: Colored pencil drawing, undated
Creator: Henry, Mary Dill, 1913-2009
Description: Untitled colored pencil drawing by Mary Henry, date unknown.
Collection: Mary Dill Henry Papers, 1913-2021

Title: TechNews, March 29, 2011
Creator: Illinois Institute of Technology
Date: 2011-03-29, 2011-03-29
Collection: Technology News print collection, 1940-2019

Title: Ink Drawings, 1981
Creator: Henry, Mary Dill, 1913-2009
Date: 2/17/1981
Description: Untitled ink drawings by Mary Henry. Inscription on verso reads "8' x 6' Feb 17 81" and also contains what appear to be mathematical...
Show moreUntitled ink drawings by Mary Henry. Inscription on verso reads "8' x 6' Feb 17 81" and also contains what appear to be mathematical calculations.
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Collection: Mary Dill Henry Papers, 1913-2021

Title: Ink and Colored Pencil Drawings, 1981
Creator: Henry, Mary Dill, 1913-2009
Date: 1981-03-01
Description: Untitled ink and colored pencil sketches by Mary Henry. Drawings are found on both sides of the sheet. Inscription on verso reads "March 1 '81."
Collection: Mary Dill Henry Papers, 1913-2021

Title: Ink and Colored Pencil Drawings, 1981, verso
Creator: Henry, Mary Dill, 1913-2009
Date: 1981-03-01
Description: Untitled ink and colored pencil sketches by Mary Henry. Drawings are found on both sides of the sheet. Inscription on verso reads "March 1 '81."
Collection: Mary Dill Henry Papers, 1913-2021

Title: Ink and Colored Pencil Drawings, 1981, recto
Creator: Henry, Mary Dill, 1913-2009
Date: 1981-03-01
Description: Untitled ink and colored pencil sketches by Mary Henry. Drawings are found on both sides of the sheet. Inscription on verso reads "March 1 '81."
Collection: Mary Dill Henry Papers, 1913-2021

Title: Intraoperative Assessment of Surgical Margins in Head And Neck Cancer Resection Using Time-Domain Fluorescence Imaging
Creator: Cleary, Brandon M.
Date: 2023
Description: Rapid and accurate determination of surgical margin depth in fluorescence guided surgery has been a difficult issue to overcome, leading to...
Show moreRapid and accurate determination of surgical margin depth in fluorescence guided surgery has been a difficult issue to overcome, leading to over- or under-resection of cancerous tissues and follow-up treatments such as ‘call-back’ surgery and chemotherapy. Current techniques utilizing direct measurement of tumor margins in frozen section pathology are slow, which can prevent surgeons from acting on information before a patient is sent home. Other fluorescence techniques require the measurement of margins via captured images that are overlayed with fluorescent data. This method is flawed, as measuring depth from captured images loses spatial information. Intensity-based fluorescence techniques utilizing tumor-to-background ratios do not decouple the effects of concentration from the depth information acquired. Thus, it is necessary to perform an objective measurement to determine depths of surgical margins. This thesis focuses on the theory, device design, simulation development, and overall viability of time-domain fluorescence imaging as an alternative method of determining surgical margin depths. Characteristic regressions were generated using a thresholding method on acquired time-domain fluorescence signals, which were used to convert time-domain data to a depth value. These were applied to an image space to generate a depth map of a modelled tissue sample. All modeling was performed on homogeneous media using Monte Carlo simulations, providing high accuracy at the cost of increased computational time. In practice, the imaging process should be completed within a span of under 20 minutes for a full tissue sample, rather than 20 minutes for a single slice of the sample. This thesis also explores the effects of different thresholding levels on the accuracy of depth determination, as well as the precautions to be taken regarding hardware limitations and signal noise.
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Title: Investigation in the Uncertainty of Chassis Dynamometer Testing for the Energy Characterization of Conventional, Electric and Automated Vehicles
Creator: Di Russo, Miriam
Date: 2023
Description: For conventional and electric vehicles tested in a standard chassis dynamometer environment precise regulations on the evaluation of their...
Show moreFor conventional and electric vehicles tested in a standard chassis dynamometer environment precise regulations on the evaluation of their energy performance exist. However, the regulations do not include requirements on the confidence value to associate with the results. As vehicles become more and more efficient to meet the stricter regulations mandates on emissions, fuel and energy consumption, traditional testing methods may become insufficient to validate these improvements, and may need revision. Without information about the accuracy associated with the results of those procedures however, adjustments and improvements are not possible, since no frame of reference exists. For connected and automated vehicles, there are no standard testing procedures, and researchers are still in the process of determining if current evaluation methods can be extended to test intelligent technologies and which metrics best represent their performance. For these vehicles is even more important to determine the uncertainty associated with these experimental methods and how they propagate to the final results. The work presented in this dissertation focuses on the development of a systematic framework for the evaluation of the uncertainty associated with the energy performance of conventional, electric and automated vehicles. The framework is based on a known statistical method, to determine the uncertainty associated with the different stages and processes involved in the experimental testing, and to evaluate how the accuracy of each parameter involved impacts the final results. The results demonstrate that the framework can be successfully applied to existing testing methods and provides a trustworthy value of accuracy to associate with the energy performance results, and can be easily extended to connected-automated vehicle testing to evaluate how novel experimental methods impact the accuracy and the confidence of the outputs. The framework can be easily be implemented into an existing laboratory environment to incorporate the uncertainty evaluation among the current results analyzed at the end of each test, and provide a reference for researchers to evaluate the actual benefits of new algorithms and optimization methods and understand margins for improvements, and by regulators to assess which parameters to enforce to ensure compliance and ensure projected benefits.
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Title: Using Niobium surface encapsulation and Rhenium to enhance the coherence of superconducting devices
Creator: Crisa, Francesco
Date: 2024
Description: In recent decades, the scientific community has grappled with escalating complexity, necessitating a more advanced tool capable of tackling...
Show moreIn recent decades, the scientific community has grappled with escalating complexity, necessitating a more advanced tool capable of tackling increasingly intricate simulations beyond the capabilities of classical computers. This tool, known as a quantum computer, features processors composed of individual units termed qubits. While various methods exist for constructing qubits, superconducting circuits have emerged as a leading approach, owing to their parallels with semiconductor technology.In recent years, significant strides have been made in optimizing the geometry and design of qubits. However, the current bottleneck in the performance of superconducting qubits lies in the presence of defects and impurities within the materials used. Niobium, owing to its desirable properties, such as high critical temperature and low kinetic inductance, stands out as the most prevalent superconducting material. Nonetheless, it is encumbered by a relatively thick oxide layer (approximately 5 nm) exhibiting three distinct oxidation states: NbO, NbO$_2$, and Nb$_2$O$_5$. The primary challenge with niobium lies in the multitude of defects localized within the highly disordered Nb$_2$O$_5$ layer and at the interfaces between the different oxides. In this study, I present an encapsulation strategy aimed at restraining surface oxide growth by depositing a thin layer (5 to 10 nm) of another material in vacuum atop the Nb thin film. This approach exploits the superconducting proximity effect, and it was successfully employed in the development of Josephson junction devices on Nb during the 1980s.In the past two years, tantalum and titanium nitride have emerged as promising alternative materials, with breakthrough qubit publications showcasing coherence times five to ten times superior to those achieved in Nb. The focus will be on the fabrication and RF testing of Nb-based qubits with Ta and Au capping layers. With Ta capping, we have achieved the best T1 (not average) decay time of nearly 600 us, which is more than a factor of 10 improvements over the bare Nb. This establishes the unique capping layer approach as a significant new direction for the development of superconducting qubits.Concurrently with the exploration of materials for encapsulation strategies, identifying materials conducive to enhancing the performance of superconducting qubits is imperative. Ideal candidates should exhibit a thin, low-loss surface oxide and establish a clean interface with the substrate, thereby minimizing defects and potential sources of losses. Rhenium, characterized by an extremely thin surface oxide (less than 1 nm) and nearly perfect crystal structure alignment with commonly used substrates such as sapphire, emerges as a promising material platform poised to elevate the performance of superconducting qubits.
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Title: The Double-edged Sword of Executive Pay: How the CEO-TMT Pay Gap Influences Firm Performance
Creator: Haddadian Nekah, Pouya
Date: 2024
Description: This study examines the relationship between the chief executive officer (CEO) and top management team (TMT) pay gap and consequent firm...
Show moreThis study examines the relationship between the chief executive officer (CEO) and top management team (TMT) pay gap and consequent firm performance. Drawing on tournament theory and equity theory, I argue that the effect of the CEO-TMT pay gap on consequent firm performance is non-monotonic. Using data from 1995 to 2022 from S&P 1500 US firms, I explicate an inverted U-shaped relationship, such that an increase in the pay gap leads to an increase in firm performance up to a certain point, after which it declines. Additionally, multilevel analyses reveal that this curvilinear relationship is moderated by attributes of the TMT, and the industry in which the firm competes. My findings show that firms with higher TMT gender diversity suffer lower performance loss due to wider pay gaps. Furthermore, when firm executives are paid more compared to the industry norms, or when the firm has a long-tenured CEO, firm performance becomes less sensitive to larger CEO-TMT pay gaps. Lastly, when the firm competes in a masculine industry, firm performance is more negatively affected by larger CEO-TMT pay gaps. Contrary to my expectations, firm gender-diversity friendly policies failed to influence the CEO-TMT pay gap-firm performance relationship.
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Title: Improving Niobium Superconducting Radio-Frequency Cavities by Studying Tantalum
Creator: Helfrich, Halle
Date: 2023
Description: Niobium superconducting radio-frequency (SRF) cavities are widely used accelerating structures. Improvements in both quality factor, Q0, and...
Show moreNiobium superconducting radio-frequency (SRF) cavities are widely used accelerating structures. Improvements in both quality factor, Q0, and maximum accelerating gradient, Eacc, have been made to SRF cavities by introducing new processing techniques. These breakthroughs include processes such as nitrogen doping(N-Doping) and infusion, electrochemical polishing (EP) and High Pressure Rinsing (HPR). [1] There is still abundant opportunity to improve the cavities or, rather, the material they’re primarily composed of: niobium. A focus here is the role the native oxide of Nb plays in SRF cavity performance. The values of interest in a given cavity are its quality factor Q0, maximum accelerating gradient Eacc and surface resistance Rs . This work characterizes Nb and Ta foils prepared under identical conditions using X-ray photoelectron spectroscopy (XPS) to compare surface oxides and better understand RF loss mechanisms in Nb SRF cavities and qubits. It is well established that Ta qubits experience much longer coherence times than Nb qubits, which is probably due to the larger RF losses in Nb oxide. By studying Tantalum, an element similar to Niobium, the mechanisms of the losses that originate in the oxide and suboxide layers present on the surface of Nb cavities might finally be unlocked. We find noticeable differences in the oxides of Nb and Ta formed by air exposure of clean foils. In particular, Ta does not display the TaO2 suboxide in XPS, while Nb commonly shows NbO2. This suggests that suboxides are an additional contributor of RF losses. We also suggest that thin Ta film coatings of Nb SRF cavities may be a way of increasing Q0. It is in the interest of the accelerator community to fully understand the surface impurities present in Nb SRF cavities so that strategies for mitigating the effects can be proposed.
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Title: Improving Localization Safety for Landmark-Based LiDAR Localization System
Creator: Chen, Yihe
Date: 2024
Description: Autonomous ground robots have gained traction in various commercial applications, with established safety protocols covering subsystem...
Show moreAutonomous ground robots have gained traction in various commercial applications, with established safety protocols covering subsystem reliability, control algorithm stability, path planning, and localization. This thesis specifically delves into the localizer, a critical component responsible for determining the vehicle’s state (e.g., position and orientation), assessing compliance with localization safety requirements, and proposing methods for enhancing localization safety.Within the robotics domain, diverse localizers are utilized, such as scan-matching techniques like normal distribution transformations (NDT), the iterative closest point (ICP) algorithm,probabilistic maps method, and semantic map-based localization.Notably, NDT stands out as a widely adopted standalone laser localization method, prevalent in autonomous driving software such as Autoware and Apollo platforms.In addition to the mentioned localizers, common state estimators include variants of Kalman Filter, particle filter-based, and factor graph-based estimators. The evaluation of localization performance typically involves quantifying the estimated state variance for these state estimators.While various localizer options exist, this study focuses on those utilizing extended Kalman filters and factor graph methods. Unlike methods like NDT and ICP algorithms, extended Kalman filters and factor graph based approaches guarantee bounding of estimated state uncertainty and have been extensively researched for integrity monitoring.Common variance analysis, employed for sensor readings and state estimators, has limitations, primarily focusing on non-faulted scenarios under nominal conditions. This approach proves impractical for real-world scenarios and falls short for safety-critical applications like autonomous vehicles (AVs).To overcome these limitations, this thesis utilizes a dedicated safety metric: integrity risk. Integrity risk assesses the reliability of a robot’s sensory readings and localization algorithm performance under both faulted and non-faulted conditions. With a proven track record in aviation, integrity risk has recently been applied to robotics applications, particularly for evaluating the safety of lidar localization.Despite the significance of improving localization integrity risk through laser landmark manipulation, this remains an under explored territory. Existing research on robot integrity risk primarily focuses on the vehicles themselves. To comprehensively understand the integrity risk of a lidar-based localization system, as addressed in this thesis, an exploration of lidar measurement faults’ modes is essential, a topic covered in this thesis.The primary contributions of this thesis include: A realistic error estimation method for state estimators in autonomous vehicles navigating using pole-shape lidar landmark maps, along with a compensatory method; A method for quantifying the risk associated with unmapped associations in urban environments, enhancing the realism of values provided by the integrity risk estimator; a novel approach to improve the localization integrity of autonomous vehicles equipped with lidar feature extractors in urban environments through minimal environmental modifications, mitigating the impact of unmapped association faults. Simulation results and experimental results are presented and discussed to illustrate the impact of each method, providing further insights into their contributions to localization safety.
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Title: Independence and Graphical Models for Fitting Real Data
Creator: Cho, Jason Y.
Date: 2023
Description: Given some real life dataset where the attributes of the dataset take on categorical values, with corresponding r(1) × r(2) × … × r(m)...
Show moreGiven some real life dataset where the attributes of the dataset take on categorical values, with corresponding r(1) × r(2) × … × r(m) contingency table with nonzero rows or nonzero columns, we will be testing the goodness-of-fit of various independence models to the dataset using a variation of Metropolis-Hastings that uses Markov bases as a tool to get a Monte Carlo estimate of the p-value. This variation of Metropolis-Hastings can be found in Algorithm 3.1.1. Next we will consider the problem: ``out of all possible undirected graphical models each associated to some graph with m vertices that we test to fit on our dataset, which one best fits the dataset?" Here, the m attributes are labeled as vertices for the graph. We would have to conduct 2^(mC2) goodness-of-fit tests since there are 2^(mC2) possible undirected graphs on m vertices. Instead, we consider a backwards selection method likelihood-ratio test algorithm. We first start with the complete graph G = K(m), and call the corresponding undirected graphical model ℳ(G) as the parent model. Then for each edge e in E(G), we repeatedly apply the likelihood-ratio test to test the relative fit of the model ℳ(G-e), the child model, vs. ℳ(G), the parent model, where ℳ(G-e) ⊆ℳ(G). More details on this iterative process can be found in Algorithm 4.1.3. For our dataset, we will be using the alcohol dataset found in https://www.kaggle.com/datasets/sooyoungher/smoking-drinking-dataset, where the four attributes of the dataset we will use are ``Gender" (male, female), ``Age", ``Total cholesterol (mg/dL)", and ``Drinks alcohol or not?". After testing the goodness-of-fit of three independence models corresponding to the independence statements ``Gender vs Drink or not?", ``Age vs Drink or not?", and "Total cholesterol vs Drink or not?", we found that the data came from a distribution from the two independence models corresponding to``Age vs Drink or not?" and "Total cholesterol vs Drink or not?" And after applying the backwards selection likelihood-ratio method on the alcohol dataset, we found that the data came from a distribution from the undirected graphical model associated to the complete graph minus the edge {``Total cholesterol”, ``Drink or not?”}.
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Title: Development of a Model To Investigate Inflammation Using Peripheral Blood Mononucleated Cells
Creator: Geevarghese Alex, Peter
Date: 2023
Description: Our modern culture in our society is facing one of the biggest risks in health which is high-calorie diet-related postprandial inflammation....
Show moreOur modern culture in our society is facing one of the biggest risks in health which is high-calorie diet-related postprandial inflammation. Chronic diseases may be caused if the energy-dense food is the choice meaning if it is uncontrolled, clinical studies have demonstrated this with the body's post-meal inflammatory response. We aimed to find the causes of postprandial inflammation in response to various dietary treatments and provide a model to demonstrate. We aimed to make use of in vivo and in vitro techniques and statistics to create a model. The created model would help us to design specific treatments to minimize inflammation with response to dietary. In addition to figuring out vital dietary additives, the model additionally facilitates the layout of individualized interventions to reduce inflammation, thereby improving long-time period health outcomes. We aim to understand the clinical observations of diet-induced postprandial inflammation on the molecular level. We desire to make contributions to reduce the impact of chronic inflammatory disorders that is associated with postprandial inflammation.
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