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Title: FACTORS INFLUENCING INDIVIDUALS’ PROVISION OF AUTONOMY SUPPORT TO THEIR PARTNERS WITH CHRONIC PAIN: A PATH ANALYSIS MODEL BASED ON SELF-DETERMINATION THEORY
Creator: Ivins-Lukse, Melissa N.
Date: 2021
Description: Receiving autonomy support from a relationship partner has been associated with increased physical activity among individuals with chronic...
Show moreReceiving autonomy support from a relationship partner has been associated with increased physical activity among individuals with chronic pain (ICP), but no studies have explored what factors may influence partners’ use of an autonomy supportive interpersonal style with an ICP. Self-determination theory (SDT) posits that contextual, perceptual, and individual factors influence how much individuals use an autonomy supportive interpersonal style through the mediators of basic psychological need satisfaction and autonomous motivation. The present study used path analysis to test a SDT model of the relationships between a contextual factor (autonomy support from health care provider), a perceptual factor (partner’s perception of ICP motivation for physical activity), an individual factor (partner catastrophizing about ICP’s pain), and the sequential mediators of relationship need satisfaction and autonomous motivation with respect to the dependent variable of partners’ use of an autonomy supportive interpersonal style. 176 partners of ICPs completed a cross-sectional survey including the Health Care Climate Questionnaire, partner-report revised Behavioral Regulation in Exercise Questionnaire, Pain Catastrophizing Scale – Significant Other version, Need Satisfaction Scale, Motivation to Help, and Interpersonal Behaviours Questionnaire-Self. The proposed model demonstrated poor fit to the data: χ2 (10) = 31.949, p < 0.001), RMSEA = 0.11 (90% CI = .07 to .16, p = 0.01), CFI = 0.81, and SRMR = .10. While the overall model was not supported, most individual pathways in the model were significant. Alternative analyses were conducted to identify a model with acceptable fit.
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Title: IDEOLOGICALLY MOTIVATED INTENTIONAL ADULTERATION: THEORY INTO INDUSTRIAL APPLICATION
Creator: DeVuyst, Adrian Jeffrey
Date: 2021
Description: Ideologically motivated intentional adulteration is an attempt to cause harm to consumers of food. Within the context of the United States of...
Show moreIdeologically motivated intentional adulteration is an attempt to cause harm to consumers of food. Within the context of the United States of America (US), the current methods of addressing this risk are evolving in the modern post-Food Safety Modernization Act (FSMA) era. Currently, the US has the Food and Drug Administration (FDA), which requires companies to have a food defense plan with a risk assessment, mitigation strategies, and recordkeeping. Additional options from Global Food Safety Initiatives (GFSI) benchmarked standards offer additional options for a company. However, even with these standards companies are still being impacted by intentional adulteration. Historical examples from the poisoning of bread in Hong Kong during British occupation and spreading of bacteria on salad bars by the followers of Rajneesh, to more modern examples of putting needles in strawberries and urinating on production equipment show a food defense system that is not always able to address intentional adulteration. The question of why companies are still having intentional adulteration comes up. The lack of food defense events and primary research on the topic creates a system where individual companies must gather data. Evaluations and surveys at a manufacturing site, N=11, indicates that there is high confidence among front line workers about their level of knowledge, but workers are unable to articulate the basic principles of food defense. Each individual company is required to create a personalized food defense system in the status quo, but the results of the survey given suggests that the data they could gather may be insufficient to create an effective food defense system.
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Title: RESIDENTIAL LOAD DATA COMPRESSION AND LOAD DISAGGREGATION
Creator: Xu, Runnan
Date: 2021
Description: Non-Intrusive Load Monitoring (NILM) for residential applications aims to dis-aggregate the total electricity consumption of a household into...
Show moreNon-Intrusive Load Monitoring (NILM) for residential applications aims to dis-aggregate the total electricity consumption of a household into the single appliance information. For the customer side, users can change their consumption habit and save more electricity. For the utility, generation scheduling will be more accurate, efficient, and secure. Furthermore, energy management system, demand response and fault diagnosis will benefit from the real time information provided by the NILM. This dissertation first proposes a data compressed method suitable for the NILM data. Then a real time disaggregation based on the Kalman filter is proposed to obtain the appliance state information. A model-free lossless data compression method for time series in smart grids (SGs), namely, Lossless Coding considering Precision (LCP) method is proposed. The LCP method encodes the current datapoint only using the immediate previous datapoint by differential coding, XOR coding, and variable length coding and transmits the encoded data once generated. It does not use the dynamics (e.g., many previous datapoints) or prior knowledge (e.g., mathematical models) of the time series. It considers the patterns, potential applications, and associated precision to preprocess the time series and especially suits high-resolution time series with long steady periods. The LCP method features low-latency and generalizability which enables real-time data communication for different time-critical tasks. Sub-metered load profiles in REDD dataset, high-resolution LIFTED dataset, AMPds dataset and PMU dataset are used to evaluate the performance of the LCP method. The results show that the LCP method demonstrates high compression ratio, low latency, and low complexity compared to state-of-the-art Resumable Data Com-pression (RDC) method, DEFLATE based on LZ77 & Huffman coding, and Lempel-Ziv-Markov Chain Algorithm (LZMA). An online method based on the transient features of individual appliances and system steady-state characteristics is proposed to estimate the appliances’ working states. It determines the number of states for each appliance via Density-based Spatial Clustering of Applications with Noise (DBSCAN) method and models the transition relationship among different states. The states of working appliances are identified from aggregated power signals by implementing the Kalman filtering method into the Factorial Hidden Markov Model (FHMM) and by the verification of system states which are the combination of working states of individual appliances. The proposed method is event based and the use of transient features extracted from event detection could achieve fast state inference and is suitable for online load disaggregation. The proposed method is tested on high-resolution dataset such as LIFTED and outperforms other related methods, including Segment-wise Integer Quadratic Constraint Programming (SIQCP), Combinatorial Optimization (CO), and the exact FHMM (FHMM_EXACT), in terms of accuracy, f1 score, and computational time.
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Title: IMPACT OF DATA SHAPE, FIDELITY, AND INTER-OBSERVER REPRODUCIBILITY ON CARDIAC MAGNETIC RESONANCE IMAGE PIPELINES
Creator: Obioma, Blessing Ngozi
Date: 2020
Description: Artificial Intelligence (AI) holds a great promise in the healthcare. It provides a variety of advantages with its application in clinical...
Show moreArtificial Intelligence (AI) holds a great promise in the healthcare. It provides a variety of advantages with its application in clinical diagnosis, disease prediction, and treatment, with such interests intensifying in the medical image field. AI can automate various cumbersome data processing techniques in medical imaging such as segmentation of left ventricular chambers and image-based classification of diseases. However, full clinical implementation and adaptation of emerging AI-based tools face challenges due to the inherently opaque nature of such AI algorithms based on Deep Neural Networks (DNN), for which computer-trained bias is not only difficult to detect by physician users but is also difficult to safely design in software development. In this work, we examine AI application in Cardiac Magnetic Resonance (CMR) using an automated image classification task, and thereby propose an AI quality control framework design that differentially evaluates the black-box DNN via carefully prepared input data with shape and fidelity variations to probe system responses to these variations. Two variants of the Visual Geometric Graphics with 19 neural layers (VGG19) was used for classification, with a total of 60,000 CMR images. Findings from this work provides insights on the importance of quality training data preparation and demonstrates the importance of data shape variability. It also provides gateway for computation performance optimization in training and validation time.
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Title: Highrise
Creator: Ma, Shasha
Date: 5/4/2011, 2011-05
Description: Highrise structure study
Sponsorship: Land, Peter

Title: Computationally Efficient Predictive Control Strategies for Autonomous Vehicles
Creator: Bhattacharyya, Viranjan
Date: 2021
Description: This thesis aims at developing computationally efficient (hence real-time applicable) control strategies for autonomous vehicles in the...
Show moreThis thesis aims at developing computationally efficient (hence real-time applicable) control strategies for autonomous vehicles in the presence of uncertainty, while incorporating high fidelity vehicle dynamics. The motivation for the control strategies is to ensure safety and improve energy efficiency of the vehicles. In this research, an effort has been made to develop control strategies to strike a balance between these competing factors. The specific contributions are: development of a new hierarchical control framework that can guarantee avoidance of red-light idling in the presence of uncertainty in preceding vehicle information/prediction in connected environment (hence improves system mobility); exploitation of a data-driven modeling approach for identifying a linear predictor for the nonlinear vehicle dynamics, which facilitates formulation of a convex equivalent problem of the original non-convex problem (hence facilitates computational tractability); introduction of a novel vehicle dynamics-aware fast game-theoretic planner for behavior and motion planning of vehicles in uncertain and unconnected environments. This thesis explores both the possible directions of future autonomous vehicles: connected and unconnected autonomous vehicles. In particular, the first problem relates to longitudinal fuel efficient driving (eco-driving) in a connected urban environment, where the connected and automated vehicles (CAVs) aim at the improvement of fuel efficiency and reduction of red-light idling (stop and go motion). The CAVs also focus on ensuring collision avoidance with the preceding vehicles despite the prediction uncertainty in future trajectory of preceding vehicles. This problem assumes vehicle-to-vehicle (V2V) and vehicle-to-infrastructure (V2I) communication, and is a longitudinal control problem. The next problem considers the uncertainty in prediction of future states of neighbouring vehicles in an unconnected environment and involves both lateral and longitudinal control. Following previous research, the interactive nature of driving is modeled using game-theory and a computationally efficient game-theoretic planner is introduced. Simulation results show the efficacy of the proposed methods in terms of computational tractability and fuel-efficiency.
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Title: Investigation in the Uncertainty of Chassis Dynamometer Testing for the Energy Characterization of Conventional, Electric and Automated Vehicles
Creator: Di Russo, Miriam
Date: 2023
Description: For conventional and electric vehicles tested in a standard chassis dynamometer environment precise regulations on the evaluation of their...
Show moreFor conventional and electric vehicles tested in a standard chassis dynamometer environment precise regulations on the evaluation of their energy performance exist. However, the regulations do not include requirements on the confidence value to associate with the results. As vehicles become more and more efficient to meet the stricter regulations mandates on emissions, fuel and energy consumption, traditional testing methods may become insufficient to validate these improvements, and may need revision. Without information about the accuracy associated with the results of those procedures however, adjustments and improvements are not possible, since no frame of reference exists. For connected and automated vehicles, there are no standard testing procedures, and researchers are still in the process of determining if current evaluation methods can be extended to test intelligent technologies and which metrics best represent their performance. For these vehicles is even more important to determine the uncertainty associated with these experimental methods and how they propagate to the final results. The work presented in this dissertation focuses on the development of a systematic framework for the evaluation of the uncertainty associated with the energy performance of conventional, electric and automated vehicles. The framework is based on a known statistical method, to determine the uncertainty associated with the different stages and processes involved in the experimental testing, and to evaluate how the accuracy of each parameter involved impacts the final results. The results demonstrate that the framework can be successfully applied to existing testing methods and provides a trustworthy value of accuracy to associate with the energy performance results, and can be easily extended to connected-automated vehicle testing to evaluate how novel experimental methods impact the accuracy and the confidence of the outputs. The framework can be easily be implemented into an existing laboratory environment to incorporate the uncertainty evaluation among the current results analyzed at the end of each test, and provide a reference for researchers to evaluate the actual benefits of new algorithms and optimization methods and understand margins for improvements, and by regulators to assess which parameters to enforce to ensure compliance and ensure projected benefits.
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Title: A Kernel-Free Boundary Integral Method for Two-Dimensional Magnetostatics Analysis
Creator: Jin, Zichao
Date: 2023
Description: Performing magnetostatic analysis accurately and efficiently is crucial for the multi-objective optimization of electromagnetic device designs...
Show morePerforming magnetostatic analysis accurately and efficiently is crucial for the multi-objective optimization of electromagnetic device designs. Therefore, an accurate and computationally efficient method is essential. Kernel Free Boundary Integral Method is a numerical method that can accurately and efficiently solve partial differential equations. Unlike traditional boundary integral or boundary element methods, KFBIM does not require an analytical form of Green’s function for evaluating integrals via numerical quadrature. Instead, KFBIM computes integrals by solving an equivalent interface problem on a Cartesian mesh. Compared with traditional finite difference methods for solving the governing PDEs directly, KFBIM produces a well-conditioned linear system. Therefore, the numerical solution of KFBIM is not sensitive to computer round-off errors, and the KFBIM requires only a fixed number of iterations when an iterative method (e.g., GMRES) is applied to solve the linear system.In this research, the KFBIM is introduced for solving magnetic computations in a toroidal core geometry in 2D. This study is very relevant in designing and optimizing toroidal inductors or transformers used in electrical systems, where lighter weight, higher inductance, higher efficiency, and lower leakage flux are required. The results are then compared with a commercial finite element solver (ANSYS), which shows excellent agreement. It should be noted that, compared with FEM, the KFBIM does not require a body-fitted mesh and can achieve high accuracy with a coarse mesh. In particular, the magnetic potential and tangential field intensity calculations on the boundaries are more stable and exhibit almost no oscillations.Furthermore, although KFBIM is accurate and computationally efficient, sharp corners can be a significant problem for KFBIM. Therefore, an inverse discrete Fourier transform (DFT) based geometry reconstruction is explored to overcome this challenge for smoothening sharp corners. A toroidal core with an airgap (C-core) is modeled to show the effectiveness of the proposed approach in addressing the sharp corner problem. A numerical example demonstrates that the method works for the variable coefficient PDE. In addition, magnetostatic analysis for homogeneous and nonhomogeneous material is presented for the reconstructed geometry, and results carried out from KFBIM are compared with the results of FEM analysis for the original geometry to show the differences and the potential of the proposed method.
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Title: Independence and Graphical Models for Fitting Real Data
Creator: Cho, Jason Y.
Date: 2023
Description: Given some real life dataset where the attributes of the dataset take on categorical values, with corresponding r(1) × r(2) × … × r(m)...
Show moreGiven some real life dataset where the attributes of the dataset take on categorical values, with corresponding r(1) × r(2) × … × r(m) contingency table with nonzero rows or nonzero columns, we will be testing the goodness-of-fit of various independence models to the dataset using a variation of Metropolis-Hastings that uses Markov bases as a tool to get a Monte Carlo estimate of the p-value. This variation of Metropolis-Hastings can be found in Algorithm 3.1.1. Next we will consider the problem: ``out of all possible undirected graphical models each associated to some graph with m vertices that we test to fit on our dataset, which one best fits the dataset?" Here, the m attributes are labeled as vertices for the graph. We would have to conduct 2^(mC2) goodness-of-fit tests since there are 2^(mC2) possible undirected graphs on m vertices. Instead, we consider a backwards selection method likelihood-ratio test algorithm. We first start with the complete graph G = K(m), and call the corresponding undirected graphical model ℳ(G) as the parent model. Then for each edge e in E(G), we repeatedly apply the likelihood-ratio test to test the relative fit of the model ℳ(G-e), the child model, vs. ℳ(G), the parent model, where ℳ(G-e) ⊆ℳ(G). More details on this iterative process can be found in Algorithm 4.1.3. For our dataset, we will be using the alcohol dataset found in https://www.kaggle.com/datasets/sooyoungher/smoking-drinking-dataset, where the four attributes of the dataset we will use are ``Gender" (male, female), ``Age", ``Total cholesterol (mg/dL)", and ``Drinks alcohol or not?". After testing the goodness-of-fit of three independence models corresponding to the independence statements ``Gender vs Drink or not?", ``Age vs Drink or not?", and "Total cholesterol vs Drink or not?", we found that the data came from a distribution from the two independence models corresponding to``Age vs Drink or not?" and "Total cholesterol vs Drink or not?" And after applying the backwards selection likelihood-ratio method on the alcohol dataset, we found that the data came from a distribution from the undirected graphical model associated to the complete graph minus the edge {``Total cholesterol”, ``Drink or not?”}.
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Title: Investigating anti-biofilm and anti-persister activities of natural compounds and antimicrobial proteins
Creator: Jin, Xing
Date: 2020
Description: Bacterial biofilm formation is frequently involved in the development of chronic infectious diseases. Inhibiting biofilms is challenging due...
Show moreBacterial biofilm formation is frequently involved in the development of chronic infectious diseases. Inhibiting biofilms is challenging due to their tolerance against conventional antibiotics which are not effective to penetrating biofilm matrix to kill the cells residing in biofilms. Metabolically dormant cells known as persisters are also not eradicated by antibiotic treatment. Therefore, novel antimicrobial drugs that can kill non-growing persisters or inhibit biofilms are needed urgently. Here, we investigate the anti-biofilm and anti-persister activities of new drug candidates including plant extracts, fatty acids and colicins. We firstly screened 50 different plant extracts on enterohemorrhagic E. coli and Listeria monocytogenes, and identified Cancavalia ensiformis-derived lectin Concanavalin A (ConA) inhibits biofilm formation of enterohemorrhagic E. coli and Listeria monocytogenes by binding to carbohydrates on bacterial cell surface. Biofilm results support that ConA lectin can be applied for developing anti-adherent and anti-biofilm agents to control biofilms. Also, fatty acids may be promising candidates as anti-persister or anti-biofilm agents, because some fatty acids exhibit antimicrobial effects. We screened a fatty acid library consisting of 65 different fatty acid molecules for altered persister formation. We found that undecanoic acid, lauric acid, and N-tridecanoic acid inhibited E. coli persister cell formation including enterohemorrhagic E. coli EDL933. These fatty acids were all medium chain saturated forms. Furthermore, the fatty acids repressed EHEC biofilm formation (for example, by 8-fold for lauric acid) without having antimicrobial activity. This study demonstrates that medium chain saturated fatty acids can serve as anti-persister and anti-biofilm agents that may be applied to treat bacterial infections. Colicins, a type of antimicrobial bacteriocins, are considered as a viable alternative of conventional antibiotics due to their unique cell killing mechanisms that can damage cells by pore-forming on the cell membrane, nuclease activity, and cell wall synthesis inhibition. In this study, we utilized cell-free protein synthesis to produce colicins with different modes of action. We optimized the production yield and activity of colicins in cell-free system. Also, we tested effect of cell-free produced colicins on persister cell formation and biofilm formation. We illustrated that colicins kill persister cells and biofilm cells. Moreover, colicins produced from the engineered probiotic E. coli cells, which can be used as a living medicine, specifically and significantly eradicate target biofilms without affecting other bacterial population. Colicins have great potential to be an antibiotic alternative, and engineered probiotic E. coli is a potential candidate for engineered bacterial therapeutics.
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Title: Parking Demand Forecasting Using Asymmetric Discrete Choice Models with Applications
Creator: Zhang, Ji
Date: 2023
Description: Using discrete choice models to forecast travelers parking location choice has been a branch of parking demand research for many years. The...
Show moreUsing discrete choice models to forecast travelers parking location choice has been a branch of parking demand research for many years. The most used discrete choice models have fairly simple mathematical expressions, such as the probit and logit models. The application of simple models helps release the computational burdens brought by parameter estimation tasks in practice, but the cost is the unwanted properties of classic models such as the “symmetry property” that we argue is often undesirable in many fields. To some extent, the symmetry property of related models limits the shape of curves that makes the model fitting less flexible technically. This study addresses the following question: “Can discrete choice models with asymmetry property outperform classic models with symmetry property in forecasting travelers’ parking location choices?” The contributions of this study include: (1) providing a new perspective of using asymmetric discrete choice models to explain and forecast individual’s parking location choice; and (2) completing the travel demand forecasting process from choices of the destination zone centroid to the parking location, enabling parking choice forecasting. This provides a generalized framework to calibrate and validate asymmetric discrete choice models with the field observed parking facility-specific arrival profile data integrated into a large-scale, high-fidelity regional travel demand model. Further, an experimental study is conducted to compare the performance of the proposed asymmetric discrete choice models in the parking demand forecasting framework. The results suggest that asymmetric discrete choice models for individual’s parking choice modeling outperform the symmetric discrete choice models such as the logit models owing largely to their flexibility of parameter fitting and training using the available dataset.
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Title: Estimation of Platinum Oxide Degradation in Proton Exchange Membrane Fuel Cells
Creator: Ahmed, Niyaz Afnan
Date: 2024
Description: The performance and durability of Proton Exchange Membrane Fuel Cells (PEMFCs) can be significantly hampered due to the degradation of the...
Show moreThe performance and durability of Proton Exchange Membrane Fuel Cells (PEMFCs) can be significantly hampered due to the degradation of the platinum catalyst. The production of platinum oxide is a major cause of the degradation of the fuel cell system, negatively affecting its performance and durability. In order to predict and prevent this degradation, this research examines a novel method to estimate degradation due to platinum oxide formation and predict the level of platinum oxide coverage over time. Mechanisms of platinum oxide formation are outlined and two methods are compared for platinum oxide estimation. Linear regression and two Artificial Neural Network (ANN) models, including a Recurrent Neural Network (RNN) and Feed-forward Back Propagation Neural Network (FFBPNN), are compared for estimation. The estimation model takes into account the influence of cell temperature and relative humidity.Evaluation of relative errors (RE) and root mean square error (RMSE) illustrates the superior performance of RNN in contrast to GT-Suite and FFBPNN. However, both RNN and GT-Suite showcase an average error rate below 5% while the FFBPNN had a higher error rate of approximately 7%. The RMSE of RNN shows mostly less compared to FFBPNN and GT-Suite, however, at 50% training data, GT-Suite shows lowest RMSE. These findings indicate that GT-Suite can be a valuable tool for estimating platinum oxide in fuel cells with a relatively low RE, but the RNN model may be more suitable for real-time estimation of platinum oxide degradation in PEM fuel cells, due to its accurate predictions and shorter computational time. This comprehensive approach provides crucial insights for optimizing fuel cell efficiency and implementing effective maintenance strategies.
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Title: Voxel Transformer with Density-Aware Deformable Attention for 3D Object Detection
Creator: Kim, Taeho
Date: 2023
Description: The Voxel Transformer (VoTr) is a prominent model in the field of 3D object detection, employing a transformer-based architecture to...
Show moreThe Voxel Transformer (VoTr) is a prominent model in the field of 3D object detection, employing a transformer-based architecture to comprehend long-range voxel relationships through self-attention. However, despite its expanded receptive field, VoTr’s flexibility is constrained by its predefined receptive field. In this paper, we present a Voxel Transformer with Density-Aware Deformable Attention (VoTr-DADA), a novel approach to 3D object detection. VoTr-DADA leverages density-guided deformable attention for a more adaptable receptive field. It efficiently identifies key areas in the input using density features, combining the strengths of both VoTr and Deformable Attention. We introduce the Density-Aware Deformable Attention (DADA) module, which is specifically designed to focus on these crucial areas while adaptively extracting more informative features. Experimental results on the KITTI dataset and the Waymo Open dataset show that our proposed method outperforms the baseline VoTr model in 3D object detection while maintaining a fast inference speed.
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Title: Quantification of Imaging Markers at Different MRI Contrast Weightings, Vasculature, and Across Field Strengths
Creator: Nguyen, Vivian S.
Date: 2024
Description: Quantitative MRI measures physical characteristics of tissue, which creates a set scale with units that allows longitudinal monitoring and...
Show moreQuantitative MRI measures physical characteristics of tissue, which creates a set scale with units that allows longitudinal monitoring and cross-patient and cross-center studies. It enables earlier detection of disease, complements biopsy, and provides a clear numeric scale for differentiation of disease states. However, quantitative MRI acquisitions and post-processing are not trivial, which makes it hard to implement the clinical setting. This along with the variability in clinically used acquisitions and post-processing techniques leads to difficulty in establishing reliable, consistent, and accurate quantitative information. There is a critical need for rigorous validation of quantitative imaging biomarkers, both for current and novel quantitative imaging techniques. This dissertation seeks to both validate current quantitative MR imaging techniques and develop new ones in the heart and brain by: 1) examining the data variability and the loss in tag fidelity that occurs when quantitative cardiac tagging is incorrectly run post-Gadolinium injection; 2) quantifying the negative impact of unexpected relaxometric behavior observed in low field MR imaging for low inversion times during T1 mapping; 3) validating retrospectively calculated T1 as a biomarker for Multiple Sclerosis progression; 4) and prototyping an oxygen extraction fraction (OEF) mapping technique for the purpose of stroke prediction and establishment of a numeric scale for tissue health for stroke patients.Assessment of pre-Gadolinium and post-Gadolinium cardiac tag quality showed that post-Gadolinium tags are less saturated (p = 0.012) and have a wider range of saturation, contrast, and sharpness. This results in a loss of information in the late cardiac cycle and impeding quantification of myocardial function.Investigation of 64mT T1 mapping revealed unique relaxometric behavior in that at low inversion times (<250 ms), the signal response curve displayed an increase in signal intensity or a plateau in signal intensity dependent on T1 relaxation time. Inclusion of this increase or plateau in signal intensity negatively impacted T1 fitting algorithms, leading to their failure or incorrectly calculated T1 values. The maximum peak signal intensity before the null point was found to be 210 ms, which impacts current low field T1 mapping protocols which use an initial inversion time of 80-110 ms.Validation of retrospectively calculated T1 as a biomarker in Multiple Sclerosis revealed that T1 of normal appearing brain tissue correlates with measures of Multiple Sclerosis progression (EDSS, BPF, and disease duration) with normal appearing white matter T1 correlating with BPF (r = -0.49, p = 0.0018); putamen T1 correlating with EDSS (r = 0.48, p = 2.40e-03), with BPF (r = 0.69, p = 2.04e-06), and disease duration (r = -0.37; p = 0.02); and globus pallidus T1 correlating with disease duration (r = -0.42; p = 0.0093). Lesion T1 is reflective of MS severity whereas MTR is not.Finally, development of an oxygen extraction fraction (OEF) mapping technique showed that application of independent component analysis (ICA) to cardiac gated spiral-trajectory phase images yielded components that feature stenosis features observed in magnitude images. These ICA components form the basis of OEF mapping from phase images. This dissertation presents four studies that seek to improve either current quantitative MR imaging protocols in the heart, or to develop and validate new quantitative MR imaging techniques in the brain for the purpose of monitoring disease progression or predicting disease.
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Title: Voxel Transformer with Density-Aware Deformable Attention for 3D Object Detection
Creator: Kim, Taeho
Date: 2023
Description: The Voxel Transformer (VoTr) is a prominent model in the field of 3D object detection, employing a transformer-based architecture to...
Show moreThe Voxel Transformer (VoTr) is a prominent model in the field of 3D object detection, employing a transformer-based architecture to comprehend long-range voxel relationships through self-attention. However, despite its expanded receptive field, VoTr’s flexibility is constrained by its predefined receptive field. In this paper, we present a Voxel Transformer with Density-Aware Deformable Attention (VoTr-DADA), a novel approach to 3D object detection. VoTr-DADA leverages density-guided deformable attention for a more adaptable receptive field. It efficiently identifies key areas in the input using density features, combining the strengths of both VoTr and Deformable Attention. We introduce the Density-Aware Deformable Attention (DADA) module, which is specifically designed to focus on these crucial areas while adaptively extracting more informative features. Experimental results on the KITTI dataset and the Waymo Open dataset show that our proposed method outperforms the baseline VoTr model in 3D object detection while maintaining a fast inference speed.
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Title: Quantification of Imaging Markers at Different MRI Contrast Weightings, Vasculature, and Across Field Strengths
Creator: Nguyen, Vivian S.
Date: 2024
Description: Quantitative MRI measures physical characteristics of tissue, which creates a set scale with units that allows longitudinal monitoring and...
Show moreQuantitative MRI measures physical characteristics of tissue, which creates a set scale with units that allows longitudinal monitoring and cross-patient and cross-center studies. It enables earlier detection of disease, complements biopsy, and provides a clear numeric scale for differentiation of disease states. However, quantitative MRI acquisitions and post-processing are not trivial, which makes it hard to implement the clinical setting. This along with the variability in clinically used acquisitions and post-processing techniques leads to difficulty in establishing reliable, consistent, and accurate quantitative information. There is a critical need for rigorous validation of quantitative imaging biomarkers, both for current and novel quantitative imaging techniques. This dissertation seeks to both validate current quantitative MR imaging techniques and develop new ones in the heart and brain by: 1) examining the data variability and the loss in tag fidelity that occurs when quantitative cardiac tagging is incorrectly run post-Gadolinium injection; 2) quantifying the negative impact of unexpected relaxometric behavior observed in low field MR imaging for low inversion times during T1 mapping; 3) validating retrospectively calculated T1 as a biomarker for Multiple Sclerosis progression; 4) and prototyping an oxygen extraction fraction (OEF) mapping technique for the purpose of stroke prediction and establishment of a numeric scale for tissue health for stroke patients.Assessment of pre-Gadolinium and post-Gadolinium cardiac tag quality showed that post-Gadolinium tags are less saturated (p = 0.012) and have a wider range of saturation, contrast, and sharpness. This results in a loss of information in the late cardiac cycle and impeding quantification of myocardial function.Investigation of 64mT T1 mapping revealed unique relaxometric behavior in that at low inversion times (<250 ms), the signal response curve displayed an increase in signal intensity or a plateau in signal intensity dependent on T1 relaxation time. Inclusion of this increase or plateau in signal intensity negatively impacted T1 fitting algorithms, leading to their failure or incorrectly calculated T1 values. The maximum peak signal intensity before the null point was found to be 210 ms, which impacts current low field T1 mapping protocols which use an initial inversion time of 80-110 ms.Validation of retrospectively calculated T1 as a biomarker in Multiple Sclerosis revealed that T1 of normal appearing brain tissue correlates with measures of Multiple Sclerosis progression (EDSS, BPF, and disease duration) with normal appearing white matter T1 correlating with BPF (r = -0.49, p = 0.0018); putamen T1 correlating with EDSS (r = 0.48, p = 2.40e-03), with BPF (r = 0.69, p = 2.04e-06), and disease duration (r = -0.37; p = 0.02); and globus pallidus T1 correlating with disease duration (r = -0.42; p = 0.0093). Lesion T1 is reflective of MS severity whereas MTR is not.Finally, development of an oxygen extraction fraction (OEF) mapping technique showed that application of independent component analysis (ICA) to cardiac gated spiral-trajectory phase images yielded components that feature stenosis features observed in magnitude images. These ICA components form the basis of OEF mapping from phase images. This dissertation presents four studies that seek to improve either current quantitative MR imaging protocols in the heart, or to develop and validate new quantitative MR imaging techniques in the brain for the purpose of monitoring disease progression or predicting disease.
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Title: Extremal and Enumerative Problems on DP-Coloring of Graphs
Creator: Sharma, Gunjan
Date: 2024
Description: Graph coloring is the mathematical model for studying problems related to conflict-free allocation of resources. DP-coloring (also known as...
Show moreGraph coloring is the mathematical model for studying problems related to conflict-free allocation of resources. DP-coloring (also known as correspondence coloring) of graphs is a vast generalization of classic graph coloring, and many more concepts of colorings studied in the past 150+ years. We study problems in DP-coloring of graphs that combine questions and ideas from extremal, structural, probabilistic, and enumerative aspects of graph coloring. In particular, we study (i) DP-coloring Cartesian products of graphs using the DP-color function, the DP coloring counterpart of the Chromatic polynomial, and robust criticality, a new notion of graph criticality; (ii) Shameful conjecture on the mean number of colors used in a graph coloring, in the context of list coloring and DP-coloring; and (iii) asymptotic bounds on the difference between the chromatic polynomial and the DP color function, as well as the difference between the dual DP color function and the chromatic polynomial, in terms of the cycle structure of a graph. These results respectively give an upper bound and a lower bound on the chromatic polynomial in terms of DP colorings of a graph.
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Title: Agency and Pathway Thinking as Mediators of The Relationship Between Caregiver Burden And Life Satisfaction Among Family Caregivers Of People With Parkinson’s Disease: An Application Of Snyder’s Hope Theory
Creator: Springer, Jessica Gabrielle
Date: 2024
Description: In the United States, there are 47.9 million caregivers providing care to family members with disabilities. Those providing care to someone...
Show moreIn the United States, there are 47.9 million caregivers providing care to family members with disabilities. Those providing care to someone who has Parkinson’s Disease (PD), a complex degenerative movement disorder, may have a unique caregiving experience, given that disease-related factors (e.g. motor and non-motor symptoms) can contribute to worsening caregiver burden and life satisfactions (LS). PD has an increasing incidence of 90,000 new cases per year, likely resulting in an increased need for caregivers. Caregiving research frequently focuses on the mediators between caregiver burden and LS including social support, coping skills, and appraisals. Research that has specifically focused on caregivers of people with PD (Pw/PD) is significantly limited. Hope is a “positive motivational characteristic comprised of agency and pathways thinking that can help facilitate drive towards one’s goal while also serving as a buffer against negative events” (Snyder et al.,1991). The goal of this study is to understand Snyder’s hope theory as it relates to caregiver burden and LS for caregivers of Pw/PD. Specifically, we hypothesized that (a) caregiver burden will be negatively correlated with agency thinking, pathways thinking, and LS among caregivers of Pw/PD. In addition, pathways thinking, and agency thinking will be positively associated with LS, and (b) agency thinking, and pathways thinking will mediate the relationship between caregiver burden and LS among caregivers of Pw/PD. The study sample consisted of 249 caregivers of Pw/PD who completed an online anonymous questionnaire. Correlations between agency and pathways thinking, LS, caregiver burden, and sociodemographic factors were evaluated. A parallel mediation analysis was run to evaluate the mediating roles of pathways and agency thinking in the relationship between caregiver burden and LS. Results indicated that LS was significantly and negatively correlated with caregiver burden. LS was significantly and positively correlated with both pathways and agency thinking. Pathways thinking had no indirect effect on the relationship of caregiver burden on LS. Agency thinking had a negative, indirect effect on the relationship suggesting that agency thinking partially mediated the relationship between caregiver burden and LS. Clinical implications and future directions are discussed.
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Title: Prediction and Control of In-Cylinder Processes in Heavy-Duty Engines Using Alternative Fuels
Creator: Pulpeiro Gonzalez, Jorge
Date: 2024
Description: This Ph.D. thesis focuses on advancing diagnostic techniques and control-oriented models to enhance the efficiency and performance of internal...
Show moreThis Ph.D. thesis focuses on advancing diagnostic techniques and control-oriented models to enhance the efficiency and performance of internal combustion (IC) engines, particularly heavy-duty engines utilizing alternative fuels. The research endeavors to contribute to the field of model-based control of engines through the development and implementation of innovative methodologies. The primary emphasis is on the development of diagnostic methods, control-oriented models and advanced control strategies for compression ignition engines using alternative fuels. The first key topic explores the determination of the Most Representative Cycle for Combustion Phasing Estimation based on cylinder pressure measurements. The method developed extracts crucial information from experimental data obtained from four distinct engines: the heavy-duty single-cylinder GCI engine, the light-duty multi-cylinder diesel engine, a CFR engine, and a single-cylinder light-duty Spark Ignition (SI) engine. This work lays the foundation for precise combustion phasing estimation, a critical parameter for engine control. The second major contribution involves the development of control-oriented models for Variable Geometry Turbochargers (VGT) and inter-coolers. Two models are established: a data-driven turbocharger model and an empirical inter-cooler model. These models are meticulously calibrated and validated using experimental data from a multi-cylinder light-duty diesel engine, providing valuable insights into the behavior of these components under varying conditions. The outcomes contribute to facilitate predictive control of engine air systems. The third core aspect of the thesis revolves around Model Predictive Control of Combustion Phasing in heavy-duty compression-ignition engines utilizing alternative fuels. A combustion phasing and engine load model is derived from experimental data and incorporated into an MPC framework. The MPC strategy is subsequently tested in the heavy-duty GCI test cell and compared against a conventional Proportional-Integral-Derivative (PID) control strategy. The results showcase the effectiveness of the MPC approach in achieving precise control of combustion phasing, demonstrating its potential for optimizing engine performance. In summary, this Ph.D. thesis contributes significantly to the field of engine controls by advancing diagnostic techniques, control-oriented models, and implementing a cutting-edge MPC-based control strategy for compression ignition engines using alternative fuels. The research findings not only enhance the understanding of in-cylinder processes but also pave the way for more efficient and sustainable heavy-duty engines using alternative fuels.
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Title: Independence and Graphical Models for Fitting Real Data
Creator: Cho, Jason Y.
Date: 2023
Description: Given some real life dataset where the attributes of the dataset take on categorical values, with corresponding r(1) × r(2) × … × r(m)...
Show moreGiven some real life dataset where the attributes of the dataset take on categorical values, with corresponding r(1) × r(2) × … × r(m) contingency table with nonzero rows or nonzero columns, we will be testing the goodness-of-fit of various independence models to the dataset using a variation of Metropolis-Hastings that uses Markov bases as a tool to get a Monte Carlo estimate of the p-value. This variation of Metropolis-Hastings can be found in Algorithm 3.1.1. Next we will consider the problem: ``out of all possible undirected graphical models each associated to some graph with m vertices that we test to fit on our dataset, which one best fits the dataset?" Here, the m attributes are labeled as vertices for the graph. We would have to conduct 2^(mC2) goodness-of-fit tests since there are 2^(mC2) possible undirected graphs on m vertices. Instead, we consider a backwards selection method likelihood-ratio test algorithm. We first start with the complete graph G = K(m), and call the corresponding undirected graphical model ℳ(G) as the parent model. Then for each edge e in E(G), we repeatedly apply the likelihood-ratio test to test the relative fit of the model ℳ(G-e), the child model, vs. ℳ(G), the parent model, where ℳ(G-e) ⊆ℳ(G). More details on this iterative process can be found in Algorithm 4.1.3. For our dataset, we will be using the alcohol dataset found in https://www.kaggle.com/datasets/sooyoungher/smoking-drinking-dataset, where the four attributes of the dataset we will use are ``Gender" (male, female), ``Age", ``Total cholesterol (mg/dL)", and ``Drinks alcohol or not?". After testing the goodness-of-fit of three independence models corresponding to the independence statements ``Gender vs Drink or not?", ``Age vs Drink or not?", and "Total cholesterol vs Drink or not?", we found that the data came from a distribution from the two independence models corresponding to``Age vs Drink or not?" and "Total cholesterol vs Drink or not?" And after applying the backwards selection likelihood-ratio method on the alcohol dataset, we found that the data came from a distribution from the undirected graphical model associated to the complete graph minus the edge {``Total cholesterol”, ``Drink or not?”}.
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