Search results

Title: GROWTH KINETICS OF SALMONELLA ENTERICA DURING REHYDRATION OF DEHYDRATED PLANT FOODS AND SUBSEQUENT STORAGE
Creator: Ren, Yuying
Date: 2020
Description: Dehydrated plant foods have low water activities and do not support the growth of pathogenic bacteria like Salmonella enterica. Once...
Show moreDehydrated plant foods have low water activities and do not support the growth of pathogenic bacteria like Salmonella enterica. Once rehydration, the water activities will increase to > 0.92, and along with their neutral pHs, plant foods may be able to support the growth of S. enterica. Therefore, product assessments are required to determine the extent to which these products support growth of S. enterica. The purpose of this study was to determine the growth kinetics of S. enterica during rehydration with 5 or 25 °C water, and subsequent storage of dehydrated potatoes, carrots, and onions at 5, 10, and 25 °C. Fresh plant foods were dehydrated at 60°C (140°F) for 24 h. Dehydrated plant foods were inoculated with 4 log CFU/g of a 4-strain cocktail of S. enterica and dried for 24 h. Samples were rehydrated using 4-volumes of 5 or 25 °C water for 24 h. During rehydration, 30 g of sample was removed and drained for 10 min. Ninety mL of BPB was added to triplicate 10-g samples. Serial dilutions of the homogenate were plated onto TSA overlaid with XLD agar for enumeration of S. enterica. After 24 h rehydration, the remaining samples were drained and stored in containers at 5, 10, and 25°C for 7 d. S. enterica was enumerated at 1, 3, 5, and 7 d. Three independent trials were conducted. Growth kinetics were determined using DMFit and data were statistically analyzed using Student’s t-test (α=0.05). Overall, the growth rates of S. enterica when 5 °C water was used for rehydration were higher than when 25 °C water was used for potatoes and carrots. The highest growth rate of S. enterica was 3.74 log CFU/g per d on potatoes, leading to a 1 log CFU/g increase in S. enterica after only 0.27 d (16 h) which occurred during storage at 25 ℃ after 5℃ water rehydration. The highest growth rate on carrots was 1.98 log CFU/g per d (requiring only 0.51 d to increase 1 log CFU/g) when rehydrated with 5℃ water and stored at 25 ℃. The growth rates were the lowest during the storage of rehydrated onions. S. enterica required 12.5 d to increase 1 log CFU/g (the growth rate was 0.61 log CFU/g per d) when the onions were rehydrated with 25 ℃ water and stored at 25 ℃. The results of this study determined that S. enterica could survive and grow in dehydrated plant foods during rehydration and storage, highlighting the need for product assessments for these types of foods.
Show less

Title: Analysis of High-Fidelity Experiments and Simulations of the Flow in Simplified Urban Environments
Creator: Stuck, Maxime
Date: 2020
Description: The mean ﬂow and turbulence statistics of the ﬂow through a simpliﬁed urban environment, which is an active research area in order to improve...
Show moreThe mean ﬂow and turbulence statistics of the ﬂow through a simpliﬁed urban environment, which is an active research area in order to improve the knowledge of turbulent ﬂow in cities, is investigated. This is useful for civil engineering, pedestrian comfort and for health concerns caused by pollutant spreading. In this work, we provide analysis of the turbulence statistics obtained both from highly-quality stereoscopic particle image-velocimetry (SPIV) measurements (from Monnier et al.) and well-resolved large eddy simulations (LES) by Torres et al. A detailed comparison of both databases reveals the impact of the geometry of the urban array on the ﬂow characteristics and provides for a good description of the turbulent features of the ﬂow around a simpliﬁed urban environment. The most prominent features of this complex ﬂow include coherent vortical structures such as the so-called arch vortex, the horseshoe vortex, or the roof vortex. These structures of the ﬂow have been identiﬁed by an analysis of the turbulence statistics. The inﬂuence of the geometry of the urban environment (and particularly the street width and the building height) on the overall ﬂow behavior has also been studied.
Show less

Title: Retrospective Quantitative T1 Imaging to Examine Characteristics of Multiple Sclerosis Lesions
Creator: Young, Griffin James
Date: 2024
Description: Quantitative MRI plays an essential role in assessing tissue abnormality and diseaseprogression in multiple sclerosis (MS). Specifically, T1...
Show moreQuantitative MRI plays an essential role in assessing tissue abnormality and diseaseprogression in multiple sclerosis (MS). Specifically, T1 relaxometry is gaining popularity as elevated T1 values have been shown to correlate with increased inflammation, demyelination, and gliosis. The predominant issue is that relaxometry requires parametric mapping through advanced imaging techniques not commonly included in standard clinical protocols. This leaves an information gap in large clinical datasets from which quantitative mapping could have been performed. We introduce T1-REQUIRE, a retrospective T1 mapping method that approximates T1 values from a single T1-weighted MR image. This method has already been shown to be accurate within 10% of a clinically available reference standard in healthy controls but will be further validated in MS cohorts. We also further aim to determine T1-REQUIRE’s statistical significance as a unique biomarker for the assessment of MS lesions as they relate to clinical disability and disease burden. A 14-subject comparison between T1-REQUIRE maps derived from 3D T1 weighted turbo field echoes (3D T1w TFE) and an inversion-recovery fast field echo (IRFFE) revealed a whole-brain voxel-wise Pearson’s correlation of r = 0.89 (p < 0.001) and mean bias of 3.99%. In MS white matter lesions, r = 0.81, R2 = 0.65 (p < 0.001, N = 159), bias = 10.07%, and in normal appearing white matter (NAWM), r = 0.82, R 2 = 0.67 (p < 0.001), bias = 9.48%. Mean lesional T1-REQUIRE and MTR correlated significantly (r = -0.68, p < 0.001, N = 587) similar to previously published literature. Median lesional MTR correlated significantly with EDSS (rho = -0.34, p = 0.037), and lesional T1-REQUIRE exhibited xiii significant correlations with global brain tissue atrophy as measured by brain parenchymal fraction (BPF) (r = -0.41, p = 0.010, N = 38). Multivariate linear regressions between T1- REQUIRE NAWM provided meaningful statistical relationships with EDSS (β = 0.03, p = 0.027, N = 38), as well as did mean MTR values in the Thalamus (β = -0.27, p = 0.037, N = 38). A new spoiled gradient echo variation of T1-REQUIRE was assessed as a proof of concept in a small 5-subject MS cohort compared with IR-FFE T1 maps, with a whole brain voxel-wise correlation of r = 0.88, R2 = 0.77 (p < 0.001), and Bias = 0.19%. Lesional T1 comparisons reached a correlation of r = 0.75, R2 = 0.56 (p < 0.001, N = 42), and Bias = 10.81%. The significance of these findings means that there is the potential to provide supplementary quantitative information in clinical datasets where quantitative protocols were not implemented. Large MS data repositories previously only containing structural T1 weighted images now may be used in big data relaxometric studies with the potential to lead to new findings in newly uncovered datasets. Furthermore, T1-REQUIRE has the potential for immediate use in clinics where standard T1 mapping sequences aren’t able to be readily implemented.
Show less

Title: Utilizing Image Processing in Evaluation of Fibroblast Stimulation for Collagen Remodeling
Creator: Yoon, Shin Hae
Date: 2023
Description: This research delves into the realm of image processing as a pivotal component in the evaluation of fibroblast stimulation for collagen...
Show moreThis research delves into the realm of image processing as a pivotal component in the evaluation of fibroblast stimulation for collagen remodeling. The study focuses on unraveling the intricate synergy between electrospun silk fibroin-carbon nanotube (SF-CNT) fibers and electrical stimulation, working in harmony to enhance tissue regeneration. Building upon our previous work, we successfully engineered SF-CNT fibers through the electrospinning process, yielding highly aligned structures reminiscent of natural extracellular matrix proteins. These fibers were fortified with water stability through post-treatment with ethanol vapor, while subtle additions of carbon nanotubes (CNTs) significantly improved fiber alignment, strength, and conductivity without compromising biocompatibility. This innovative platform served as a cell culture matrix for fibroblasts harvested from pelvic organ prolapse (POP) patients, facilitating electrical stimulation that triggered a substantial increase in collagen production. In this study, we harnessed the power of various image-processing software tools, including ImageJ and Python, to analyze immunostained images of fibroblasts obtained from POP patients. Under carefully tailored electrical stimulation conditions, the stimulated cells exhibited an astonishing up to 11.97-fold increase in alpha-smooth muscle actin (α-SMA) expression, unequivocally signifying the successful activation of myofibroblasts. Additionally, in an animal model employing LOX-knockout mice to mimic collagen disorders associated with POP, the application of optimized electrical stimulation conditions for patient 003 led to a remarkable surge in collagen production and structural enhancement, underlining the potential of electrical stimulation in expediting tissue remodeling. Intriguingly, fibroblasts from patient 005 and patient 006 exhibited a distinct response, shedding light on the influence of POP severity on cellular behavior. This study firmly reinforces the imperative of personalized therapeutic approaches, emphasizing the need to customize treatment strategies to align with individual patient characteristics through innovative biological image analysis techniques.
Show less

Title: Effect of organic acid treatment in reducing Salmonella on six types of sprout seeds
Creator: Yang, Dachuan
Date: 2023
Description: Fresh sprouts present a special food safety concern as their growing conditions also favor the growth of pathogens such as Salmonella....
Show moreFresh sprouts present a special food safety concern as their growing conditions also favor the growth of pathogens such as Salmonella. Contamination in sprouts often originates from the seeds used for sprouting. The Produce Safety Rule requires that seeds used to grow sprouts be treated to reduce pathogens. The treatments may be applied by sprout growers or by seed suppliers. Although 20,000 ppm calcium hypochlorite is the most used seed treatment method, the high chlorine level can be hazardous to workers and the environment. Alternative seed treatment methods that are safe and environmentally friendly are needed. In addition, a post-treatment drying step is needed when seed suppliers are using chemical seed treatment methods. This study evaluated the efficacy of an organic acid solution for reducing Salmonella on six types of seeds (alfalfa, clover, radish, mung bean, onion, and broccoli). The impact of treatment on seed germination and sprout yield was also examined. Ten grams of seeds inoculated with a five-serotype cocktail of Salmonella were pre-rinsed with 40 ml of water twice and treated with 75.7 ml of the organic acid solution for 1 hour. The treated seeds were either not rinsed or rinsed with 40 ml of water twice before being dried in the biological safety cabinet for 24 hours. The Salmonella level, germination percentage, and sprout yield of seeds treated with water, seeds treated with the organic acid solution, seeds treated with organic acid, dried, and rinsed, and seeds treated with organic acids, dried, and not rinsed were compared. Salmonella reductions that could be achieved with this organic acid solution treatment were less than 0.5 log CFU/g without drying, 0.6-2.0 log CFU/g with drying and rinse, or 1.6-2.9 log CFU/g with drying and no rinse. Drying significantly enhanced the treatment efficacy (p < 0.05 ) on alfalfa, radish, mung bean, and onion seeds. If seeds were not rinsed after treatment, the log reductions achieved on mung bean and onion seeds were significantly higher (p < 0.05). If seeds were treated and rinsed, the germination rates of six types of seeds were not affected (p > 0.05) regardless of whether the seeds were dried or not. All treatments significantly decreased the sprout yield of clover seeds by 13% (p < 0.05 ). If seeds were not rinsed after treatment, the germination rates of clover and broccoli seeds were reduced by 7 and 9%, respectively, and the sprout yield of alfalfa seeds was reduced by 35%. Overall, the organic acid solution was ineffective when compared with 20,000 ppm calcium hypochlorite in reducing Salmonella on sprout seeds, although the drying step after treatment could improve the treatment efficacy.
Show less

Title: Adaptive Learning Approach of a Domain-Aware CNN-Based Model Observer
Creator: Bogdanovic, Nebojsa
Date: 2023
Description: Application of convolutional neural networks (CNNs) for performing defect detection tasks and their use as model observers (MO) has become...
Show moreApplication of convolutional neural networks (CNNs) for performing defect detection tasks and their use as model observers (MO) has become increasingly popular in the medical imaging field. Building upon this use of CNN MOs, we have trained the CNNs to discern between the data it was trained on, and the previously unseen images. We termed this ability domain awareness. To achieve domain awareness, we are simultaneously training a new variation of U-Net CNN to perform defect detection task, as well as to reconstruct a noisy input image. We have shown that the values of the reconstruction mean squared error can be used as a good indicator of how well the algorithm performs in the defect localization task, making a big step towards developing a domain aware CNN MO. Additionally, we have proposed an adaptive learning approach for training these algorithms, and compared them to the non-adaptive learning approach. The main results that we achieved were for the ideal observers, but we also extended these results to human observer data. We have compared different architectures of CNNs with different numbers and sizes of layers, as well as introduced data augmentation to further improve upon our results. Finally, our results show that the proposed adaptive learning approach with introduced data augmentation drastically improves upon the results of a non-adaptive approach in both human and ideal observer cases.
Show less

Title: Evaluating antimicrobial efficacy of GS-2 on reusable food packaging materials
Creator: Birje, Nupoor Prasad
Date: 2024
Description: Packaging plays an important role in maintaining the quality and safety of fresh produce throughout storage, transportation and end-use by...
Show morePackaging plays an important role in maintaining the quality and safety of fresh produce throughout storage, transportation and end-use by consumers. Single-use packaging poses several environmental impacts; therefore use of reusable packaging is being encouraged in the fresh produce supply chain. However, the utilization of harmful chemicals and inadequate sanitation standards limit the reuse of packaging materials. To overcome these limitations, this study focuses on testing a non-toxic, water-soluble antimicrobial; GS-2 coating to facilitate the reuse of food packaging and reduce the risk of microbial contamination. In this study, the antimicrobial activity of GS-2 was evaluated against foodborne pathogens; Escherichia coli, Listeria monocytogenes and Salmonella enterica on plastic and cardboard coupons at 1 h and 15 min treatment times and 0.3%, 1% and 3% concentration. These coupons were also stored at 4℃ and 90% R.H. and 18℃ and 45% R.H. inoculated on different days up to 42 d with E. coli or L. monocytogenes to study retention of activity of GS-2. Additionally, the efficacy of GS-2 to reduce transfer of bacteria from cardboard and plastic to tomato was investigated. The initial level of inoculum was 9 log CFU/surface for all experiments. Cardboard and plastic without GS-2 were used to compare the reduction of bacteria on the treated surfaces. The differences in the population of bacteria were evaluated using Student’s T-Test and ANOVA; p <0.05 was considered significant. With 3% GS-2 concentration on plastic, there was > 4.50 log CFU/surface reduction of all three bacteria in 1 h. There was a lower reduction of the population on cardboard as compared to plastic for all bacteria, the reduction obtained was 1.83, 2.65 and 3.42 log CFU/surface for E. coli, L. monocytogenes and S. enterica, respectively, in 1 h. There was no significant difference between 15 min and 1 h treatments for cardboard. Further, the highest reduction of bacteria was obtained with 3% GS-2 on plastic. For cardboard, no significant difference in population reduction was obtained for E. coli or S. enterica, with 1% or 3% GS-2. However, for L. monocytogenes there was a higher reduction with 3%. GS-2 remained active on the surface of plastic and cardboard for a period of six weeks. For cardboard, there was a lower reduction of bacteria and there was no trend in the population reduction from 0 to 42 d, with the populations remaining within a range of 4-5 log CFU/surface. There was a significant transfer of E. coli or L. monocytogenes from plastic surfaces without GS-2 to tomato at 5-6 log CFU/tomato. However, the transfer of bacteria from the GS-2-coated plastic to the tomato was below the limit of enumeration. For cardboard, the population was below the limit of enumeration, irrespective of the GS-2 coating. Based on the results, GS-2 is a promising antimicrobial that reduces the microbial load on packaging surfaces and prevents cross-contamination of fresh produce. The retention of GS-2 activity makes it suitable for reusable packaging applications.
Show less

Title: Examination of Listeria monocytogenes survival in refrigerated chopped hard-boiled eggs and deli salads containing this ingredient
Creator: Marathe, Aishwarya Nagesh
Date: 2024
Description: Peeled hard-boiled eggs (HBEs) are widely favored by both consumers and food services due to their convenience. These HBEs are often chopped...
Show morePeeled hard-boiled eggs (HBEs) are widely favored by both consumers and food services due to their convenience. These HBEs are often chopped and incorporated into various dishes such as deli salads. However, recent recalls of hard-boiled eggs have brought attention to the risk of contamination with Listeria monocytogenes. Prepared HBEs are typically subjected to antibacterial treatment to maintain product safety and quality. Citric acid is a common antibacterial used in the food industry to treat the HBEs. Previous research has determined that 2% citric acid treatment is effective against L. monocytogenes on whole HBEs. This study examined the efficacy of citric acid on the reduction of L. monocytogenes on chopped HBEs and in deli salads containing chopped HBEs. HBEs were treated with 2% citric acid or water (untreated) by submersion for 24 h at 5°C. HBEs were dried for 10 min, inoculated with a 4-strain cocktail of rifampicin-resistant L. monocytogenes, at 1 (low-level inoculation) or 4 log CFU/HBE (high level-inoculation), and allowed to dry for 10 min. Low-level inoculated HBEs were chopped and stored at 5, 10, or 15°C for 28 d. High-level inoculated HBEs were chopped and stored at 5, 10, and 25°C for 14 d. Low-level inoculated HBEs were also chopped and incorporated into potato, tuna, chicken, or macaroni salad at a 1:6 ratio (HBE to other ingredients), or into egg salad at a 7:1 ratio. Salads were stored at 5, 10, or 15°C for 28 d. The presence of L. monocytogenes was determined at intervals during storage by enrichment with BLEB and/or enumerated on BHIArif throughout storage. Triplicate samples were assessed for each time point, and three independent trials were conducted. Data was analyzed by Student’s T-test, ANOVA, and Fisher’s exact test, p≤0.05. For low-level inoculated chopped HBEs, the L. monocytogenes population was significantly higher in untreated chopped HBEs (1.86±0.33 log CFU/g) as compared to treated chopped HBEs (1.47±0.27 log CFU/g) on day 14 at 15°C. On both untreated and treated chopped HBEs, there was no significant difference in the population of L. monocytogenes up to 7 d. However, from 14 d, there was a significant increase in the growth of L. monocytogenes (1.86±0.33 to 2.18±0.35 log CFU/g on untreated chopped HBEs and 1.47±0.27 to 1.94±0.47 log CFU/g for treated, respectively). For high-level inoculated HBEs, a higher L. monocytogenes growth rate was observed on untreated chopped HBEs as compared to treated chopped HBEs at 10 and 25°C. It was observed that treated chopped HBEs at 5°C took the longest to reach 1 log CFU/g increase in the L. monocytogenes population (50 d) whereas, untreated chopped HBEs at 25°C took the shortest (0.22 d). Untreated chopped HBEs showed a significantly higher population of L. monocytogenes as compared to treated chopped HBEs on 14 d at all storage temperatures. In deli salads containing chopped HBEs, potato salad showed the highest growth of L. monocytogenes after 14 d, followed by macaroni, egg, chicken, and tuna salad. The population of L. monocytogenes was the lowest in tuna salad. L. monocytogenes was present throughout the storage period at all storage temperatures. It was observed that 2% citric acid is more efficient in controlling the growth of L. monocytogenes in chopped HBEs as compared to when those HBEs are incorporated into deli salads. The findings contribute to the formulation of preventive measures and standards aimed at guaranteeing the safety of HBEs.
Show less

Title: Resolvent Analysis of Turbulent Flow over Compliant Surfaces: Optimization Methods and Stability Considerations.
Creator: Lapanderie, Kilian Pierre Lucien
Date: 2024
Description: This thesis delves into the manipulation of turbulence properties through innovative compliant surface designs. Turbulence, known for its...
Show moreThis thesis delves into the manipulation of turbulence properties through innovative compliant surface designs. Turbulence, known for its unpredictable fluid movements, presents substantial challenges across engineering disciplines, particularly in optimizing system efficiency and minimizing energy losses. This research explores the potential of compliant surfaces to control and mitigate the adverse effects of turbulent flow, thereby enhancing the performance and reliability of engineering systems.Employing the resolvent analysis method, this work investigates the interaction between turbulent flows and surfaces capable of dynamic adaptation. The study evaluates the impact of these surfaces on turbulence suppression through the application of both space-dependent and independent compliance models, where the compliance model is characterised by an admittance, which represents the relationship between the instantaneous surface pressure and surface velocity. This approach allows for a nuanced understanding of how different surface properties can influence the behavior of turbulent flows.A significant contribution of this thesis is the comprehensive stability analysis conducted to assess the implications of compliant surfaces on the linear stability of the dynamical system. By examining the eigenvalues of the mean-linearized system, the research identifies the conditions under which compliant surfaces may induce or mitigate instabilities within turbulent flows. This analysis is pivotal in developing compliant surface designs that not only reduce turbulence-induced energy losses but also ensure the stability of the flow, a critical consideration for practical engineering applications.The findings of this thesis offer valuable insights into the role of surface compliance in turbulence control, paving the way for further research and the development of advanced engineering solutions. Through a detailed investigation of the interactions between compliant surfaces and turbulent flows, this work contributes to the broader field of fluid dynamics and underscores the potential of innovative surface designs in achieving more efficient and sustainable engineering systems.
Show less

Title: Measurement and Control of Beam Energy at the Fermilab 400 MeV Transfer Line
Creator: Mwaniki, Matilda W.
Date: 2023
Description: Linac is the first machine in the Accelerator chain at Fermilab where particles are accelerated from 35 keV to 400 MeV and travel to the...
Show moreLinac is the first machine in the Accelerator chain at Fermilab where particles are accelerated from 35 keV to 400 MeV and travel to the Booster where they are stripped of the extra electrons to become protons. Tuning Linac is performed using diagnostics to ensure stable intensity and energy while minimizing uncontrolled particle loss. I have been revisiting diagnostics in the Linac in order to understand their signals and to ensure their data is reliable. I revisited Beam Loss Monitors (BLMs) for the loss data confidence. For the confidence of energy data there were two approaches. The first approach was time-of-flight measurements using Beam Position Monitors (BPMs) and beam velocity stripline pick-up that provides beam phase data. The second approach used the relation between beam position data from BPMs and dispersion values from MAD-X simulation to calculate energy. Our goal after understanding the data from the Linac diagnostics and finding the data reliable is to control the Linac parameters using Machine Learning techniques to increase the reliability and quality of beam delivered from Linac.
Show less

Title: Voxel Transformer with Density-Aware Deformable Attention for 3D Object Detection
Creator: Kim, Taeho
Date: 2023
Description: The Voxel Transformer (VoTr) is a prominent model in the field of 3D object detection, employing a transformer-based architecture to...
Show moreThe Voxel Transformer (VoTr) is a prominent model in the field of 3D object detection, employing a transformer-based architecture to comprehend long-range voxel relationships through self-attention. However, despite its expanded receptive field, VoTr’s flexibility is constrained by its predefined receptive field. In this paper, we present a Voxel Transformer with Density-Aware Deformable Attention (VoTr-DADA), a novel approach to 3D object detection. VoTr-DADA leverages density-guided deformable attention for a more adaptable receptive field. It efficiently identifies key areas in the input using density features, combining the strengths of both VoTr and Deformable Attention. We introduce the Density-Aware Deformable Attention (DADA) module, which is specifically designed to focus on these crucial areas while adaptively extracting more informative features. Experimental results on the KITTI dataset and the Waymo Open dataset show that our proposed method outperforms the baseline VoTr model in 3D object detection while maintaining a fast inference speed.
Show less

Title: Ultrasound Image Guided Robot Arm for Targeted Delivery of Therapeutic Drugs and MicroRNA for Cancer Therapy
Creator: Nagarajan Parimala, Abishek
Date: 2024
Description: Molecular imaging has revolutionized medical diagnostics by providing detailed insights into biological processes at the molecular level...
Show moreMolecular imaging has revolutionized medical diagnostics by providing detailed insights into biological processes at the molecular level within the living subject. Ultrasound Molecular Imaging (USMI) has emerged as a promising diagnostic imaging modality by utilizing targeted contrast agents to unveil crucial molecular information, including vascular biomarkers associated with cancer and other diseases. Despite its potential, the transition of Ultrasound Contrast Agents (UCA) from preclinical evaluation to FDA-approved clinical use faces challenges due to the short in vivo half-life of Micro-Bubbles (MBs), necessitating repeated administrations for comprehensive assessments. Moreover, conventional ultrasound imaging methods suffer from limited scanning areas and single-target focus, leading to low throughput in preclinical evaluations.This thesis addresses these challenges by proposing a robot-assisted whole-body scanning pipeline for preclinical evaluations in Ultrasound Molecular Imaging. By integrating a robotic arm into the imaging setup, this approach enhances scanning flexibility and precision, enabling scans across the entire body of a mouse. This extension of the imaging time window allows for comprehensive assessments without the need for repeated contrast agent administrations. Additionally, the ability to simultaneously scan multiple targets within the same session significantly increases the throughput of preclinical assessments, thereby improving the efficiency and reliability of Ultrasound Molecular Imaging in clinical translation.
Show less

Title: IMPACT OF DATA SHAPE, FIDELITY, AND INTER-OBSERVER REPRODUCIBILITY ON CARDIAC MAGNETIC RESONANCE IMAGE PIPELINES
Creator: Obioma, Blessing Ngozi
Date: 2020
Description: Artificial Intelligence (AI) holds a great promise in the healthcare. It provides a variety of advantages with its application in clinical...
Show moreArtificial Intelligence (AI) holds a great promise in the healthcare. It provides a variety of advantages with its application in clinical diagnosis, disease prediction, and treatment, with such interests intensifying in the medical image field. AI can automate various cumbersome data processing techniques in medical imaging such as segmentation of left ventricular chambers and image-based classification of diseases. However, full clinical implementation and adaptation of emerging AI-based tools face challenges due to the inherently opaque nature of such AI algorithms based on Deep Neural Networks (DNN), for which computer-trained bias is not only difficult to detect by physician users but is also difficult to safely design in software development. In this work, we examine AI application in Cardiac Magnetic Resonance (CMR) using an automated image classification task, and thereby propose an AI quality control framework design that differentially evaluates the black-box DNN via carefully prepared input data with shape and fidelity variations to probe system responses to these variations. Two variants of the Visual Geometric Graphics with 19 neural layers (VGG19) was used for classification, with a total of 60,000 CMR images. Findings from this work provides insights on the importance of quality training data preparation and demonstrates the importance of data shape variability. It also provides gateway for computation performance optimization in training and validation time.
Show less

Title: Associations between subjective cognitive decline, neurodegeneration, and vascular neuroimaging markers: Findings from a multiethnic cohort
Creator: Gonzalez, Christopher
Date: 2023
Description: Mounting evidence suggests that subjective cognitive decline (SCD) may provide a unique target to identify the earliest changes in cognitive...
Show moreMounting evidence suggests that subjective cognitive decline (SCD) may provide a unique target to identify the earliest changes in cognitive function in Alzheimer’s disease (AD). In addition, vascular-related risk factors are also linked to increase the risk of clinical expression of AD, and independently increase the risk for vascular dementia (VaD). However, most investigations have not explored SCD across a multiethnic population. The study investigated 1) the associations between white matter hyperintensities (WMH) and targeted neuroimaging AD markers (hippocampal volume, cortical thickness of AD regions) with SCD amongst a multiethnic cohort, and 2) whether race moderated the relationship between them. A total of 871 older adults ages from 62-96 years old with a mean age of 74.48 (SD = 6.11), mean education of 12.79 years (SD = 4.53), and with 62% identifying as female were recruited from preexisting data from the Washington Heights Inwood Columbia Aging Project (WHICAP). Linear regression model revealed a significant association between WMH and both AD targeted neuroimaging markers across the total sample. Secondary analyses revealed that race did not moderate the relationship between WMH and AD cortical thickness with SCD but did in fact moderate the relationship between hippocampal volume and SCD. Results suggest that cultural biological differences exist in the Hispanic/Latine individuals compared to non-Hispanic White and non-Hispanic Black individuals.
Show less

Title: Evaluation of the Native Microbiota and Comparative Analysis of a Known Cronobacter Sakazakii and a Newly Isolated Bacillus Cereus Strain in Powdered Infant Formula
Creator: Patil, Sonali Prashant
Date: 2024
Description: There have been numerous reports of Powdered Infant Formula (PIF) recalls and outbreaks due to the absence of a kill step in the post...
Show moreThere have been numerous reports of Powdered Infant Formula (PIF) recalls and outbreaks due to the absence of a kill step in the post-pasteurization processing, improper handling pre and post processing and/or reconstitution, and lack of effective sanitization and cleaning of the food contact surfaces in the manufacturing facilities. The objectives of this present study were to 1) survey and identify background microflora in commercial PIF products through microbiological analysis, 16S rRNA, and whole genome sequencing (WGS); 2) compare the survival rate of a known Cronobacter sakazakii and a newly isolated Bacillus cereus DFPST-SP1 in PIF under a humidity level of 33 ± 3% over a period of 28 d; 3) examine the relative resistance of these two strains to thermal treatments at temperatures 40, 70, and 100 °C followed by storage at room temperature (RT) for 30 min; and 4) evaluate the bactericidal effect of 70% ethanol on the two artificially deposited bacterial strains on stainless steel (SS) and plastic coupons. Three biological trials were conducted for each study. To determine whether the increase, decrease, or difference in the bacterial populations and other parameters like water activity (aw) was statistically significant, a T-test was performed (p ≤ 0.05 was considered significant). Results of 16S rRNA sequencing revealed the presence of certain bacterial species in PIF, such as Lactococcus lactis, B. cereus, Listeria monocytogenes, Staphylococcus aureus, Salmonella enterica, etc. distributed across a relative abundance of >25%, <25%, and ≤3%. After the enrichment and isolation as per Bacteriological Analytical Manual (BAM), C. sakazakii or S. enterica were not detected, while colonies exhibiting a blue-green appearance resembling Listeria spp. and certain Bacillus spp. were subjected to WGS for species-level identification. The assembly_1 from formulation 1 was confirmed as B. cereus sequence type 2255 and was renamed as B. cereus DFPST-SP1 in the contribution of this thesis work. The storage study conducted on PIF inoculated with C. sakazakii and B. cereus DFPST-SP1 at 33% RH showed that there was 0.25-0.27 log CFU/g reduction towards the end of 28 d, but no significant difference was observed between the two strains. The thermal challenge study revealed that the newly isolated B. cereus strain and C. sakazakii used in this study were highly thermotolerant. Based on the sanitizer challenge study, 70% ethanol was significantly more effective in reducing populations of C. sakazakii as compared to B. cereus. Moreover, higher log reductions of C. sakazakii 587 populations on stainless steel coupons compared to plastic coupons were observed, indicating that bacteria adhere more tightly to plastic surfaces than stainless steel (SS). Overall, the findings of this study shed new light on bolstering the safety standards of PIF and highlight the need for improved cleaning and sanitization procedures within manufacturing facilities in order to ensure the safety of reconstituted PIF, thereby enhancing public health, particularly infants and neonates.
Show less

Title: Cardiolipin Modulates the Insertion of Adsorbed Helical Amyloid Beta Peptide Into Model Mitochondrial Membranes
Creator: Kaczmarek, Julia A.
Date: 2023
Description: The loss of mitochondrial phospholipid cardiolipin (CL) may play a role in both the pathogenesis of Alzheimer's Disease (AD) and its treatment...
Show moreThe loss of mitochondrial phospholipid cardiolipin (CL) may play a role in both the pathogenesis of Alzheimer's Disease (AD) and its treatment. An effector molecule of the disease, amyloid-beta (Aβ), has been observed to interact with lipid membranes, but its relevance to mitochondrial membranes containing CL remained elusive. The present study investigated if the presence of CL modulated the insertion of adsorbed helical amyloid beta (Aβ14-40) into model mitochondrial membranes, and if this effect was more pronounced for its N-terminus or C-terminus. I conducted a coarse-grained computer simulation using well-tempered metadynamics to traverse the free energy landscape that maps the translocation of Aβ14-40. Insertion into CL-containing bilayers created larger local membrane deformations and modulated the location of the transition path but had an inconclusive impact on the free energy cost of translocation. Since the generation of toxic calcium-permeable pores depends on the insertion of Aβ into the bilayer, the loss of CL seen in AD may prime the inner mitochondrial membrane for pore formation, but more research is needed to pursue this hypothesis.
Show less

Title: Evaluation of the efficacy of power ultrasound technology coupled with organic acids to reduce listeria monocytogenes on peaches and apples
Creator: Joshi, Mayura Anand
Date: 2024
Description: Fresh fruits and vegetables are prone to microbial contamination throughout different phases of human handling, processing, transportation,...
Show moreFresh fruits and vegetables are prone to microbial contamination throughout different phases of human handling, processing, transportation, and distribution. Emerging technologies, such as power ultrasound, have received attention due to their capacity to reduce or eliminate foodborne bacterial pathogens on these commodities. Power ultrasound, when combined with certain antimicrobials, has demonstrated its effectiveness as a valuable tool for washing fresh produce. The objective of this study was to examine the effectiveness of power ultrasound combined with organic acids on the reduction of Listeria monocytogenes on fruits. In this study, peaches and apples were subjected to surface inoculation with a four-strain cocktail of L. monocytogenes and dried for 1 h. Stomacher bags, containing 225 mL of citric, lactic, or malic acids at concentrations of 1%, 2%, or 5%, were employed for treating inoculated peaches and apples. The acid treatment was used alone, or in combination with power ultrasound for 2, 5, or 10 min. Water was used for controls. Before treatment, the initial population of L. monocytogenes on apples was lower compared to the initial population on peaches, with apples showing a 1.94 log CFU/fruit reduction. Water controls demonstrated no significant log reduction in both apples and peaches. The greatest L. monocytogenes reduction on apples occurred when treated with 1% citric acid for 2 min with power ultrasound where L. monocytogenes was significantly reduced from 6.98±0.88 log CFU/fruit to 5.56±0.91 log CFU/fruit. The greatest L. monocytogenes reduction on peaches occurred when treated with 5% citric acid for 5 min with power ultrasound where L. monocytogenes was significantly reduced from 7.44±0.45 log CFU/fruit to 6.68±0.40 log CFU/fruit. Overall, the combined effect of acid and power ultrasound was more pronounced in apples than in peaches. The survival of L. monocytogenes on apples and peaches appeared to be highly dependent on the specific treatment and hurdle technology applied. The combination of ultrasound hurdle technology with acid washing has proven effective in reducing L. monocytogenes on both peaches and apples, with a more significant impact observed on apples. While acid washing is a more economical option compared to ultrasound technology, the efficiency of microorganism reduction is considerably enhanced when power ultrasound is combined with organic acids. Looking ahead, the development of cost-effective power ultrasound methods could facilitate widespread adoption of ultrasound hurdle technology in the produce industry.
Show less

repository.iit

Search the repository

Pages

Pages

Enabled Filters

Refine Results

Date

Academic status of creator

Department

Subject

Creator